Protein-coding genes
Dataset information
This is protein-gene association network that contais information on genes and proteins encoded by these genes. Nodes represent genes and proteins, and edges protein-coding relationships.
| Dataset statistics | |
|---|---|
| Nodes | 125234 |
| Gene nodes | 22784 |
| Protein nodes | 102450 |
| Edges | 102450 |
| Nodes in largest SCC | 66 |
| Fraction of nodes in largest SCC | 1.000000 |
| Edges in largest SCC | 65 |
| Fraction of edges in largest SCC | 0.000634 |
| Diameter (longest shortest path) | 2 |
| 90-percentile effective diameter | 1.853109 |
Protein-coding genes are DNA sequences that code for proteins. Each gene tells the cell how to put together the building blocks for one specific protein (there exist exceptions to this general principle, e.g., isoforms). The DNA sequences are first transcribed into mRNA. The corresponding mRNA molecules are then translated into polypeptide chains and these chains ultimately result in a protein, which is a working molecule in the cell.
References
- The BioMart community portal: an innovative alternative to large, centralized data repositories. Smedley, Damian, et al. Nucleic Acids Research. 2015.
- Ensembl 2015. Cunningham, Fiona, et al. Nucleic Acids Research. 2014.
- MINER: Gigascale multimodal biological network. Stanford SNAP Group. GitHub Repository. 2017.
Files
| File | Size | Description |
|---|---|---|
| GP-Miner_miner-gene-protein.tsv.gz | 3.2MB | Gene-protein mapping |