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yum install tk tcl tix | |
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==== Libjpeg ==== {{{ |
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==== Lapack ==== {{{ yum install lapack-devel lapack yum install blas blas-devel yum install atlas-devel atlas }}} |
}}} ==== Lapack, Blas, Atlas ==== {{{ yum install lapack lapack-devel blas blas-devel atlas atlas-devel }}} ==== Yaml ==== {{{ |
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* Libraries: * Graphviz () * Utilities: * p7zip (http://p7zip.sourceforge.net/) * p7zip from EPEL does NOT include RAR support which we need * Use RPMs from /afs/cs/group/infolab/software * iperf (http://sourceforge.net/projects/iperf/) * fio (http://freecode.com/projects/fio) * ganglia-gmond * Python 2.7 * Nose () * Pyyaml (http://pyyaml.org/) * Numpy (http://www.numpy.org/) * Scipy (http://www.scipy.org/) * !BeautifulSoup (http://www.crummy.com/software/BeautifulSoup/) * Matplotlib (http://matplotlib.org/) * NetworkX (http://networkx.github.com/) * Nltk (http://nltk.org/) * Pygraphviz (http://networkx.lanl.gov/pygraphviz/) * Cvxopt (http://abel.ee.ucla.edu/cvxopt/) * Scikit-learn (http://scikit-learn.org/stable/) |
}}} |
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http://p7zip.sourceforge.net/ * p7zip from EPEL does NOT include RAR support which we need * Use RPMs from /afs/cs/group/infolab/software |
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http://sourceforge.net/projects/iperf/ |
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http://freecode.com/projects/fio |
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}}} ==== Tcl/Tk ==== {{{ yum install tk tk-devel tcl-devel tix-devel |
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http://pyyaml.org/ |
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==== BeautifulSoup ==== http://www.crummy.com/software/BeautifulSoup/ {{{ easy_install-2.7 beautifulsoup4 python2.7 from bs4 import BeautifulSoup }}} ==== Numpy ==== http://www.numpy.org/ {{{ easy_install-2.7 numpy }}} ==== Scipy ==== http://www.scipy.org/ {{{ easy_install-2.7 scipy }}} ==== Matplotlib ==== http://matplotlib.org/ {{{ easy_install-2.7 matplotlib }}} ==== NetworkX ==== http://networkx.github.com/ {{{ easy_install-2.7 networkx }}} |
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http://networkx.lanl.gov/pygraphviz/ |
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==== Numpy ==== {{{ easy_install-2.7 numpy }}} ==== Scipy ==== {{{ easy_install-2.7 scipy }}} ==== Matplotlib ==== {{{ easy_install-2.7 matplotlib }}} ==== NetworkX ==== {{{ easy_install-2.7 networkx }}} |
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http://nltk.org/ |
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http://scikit-learn.org/stable/ |
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http://abel.ee.ucla.edu/cvxopt/ |
Stuff that should be running on every server...
Base software
Libraries
Graphviz
yum install graphviz graphviz-devel graphviz-graphs graphviz-gd
Libjpeg
yum install libjpeg libjpeg-devel
Lapack, Blas, Atlas
yum install lapack lapack-devel blas blas-devel atlas atlas-devel
Yaml
yum install libymal libyaml-devel
Utilities
p7zip
- p7zip from EPEL does NOT include RAR support which we need
- Use RPMs from /afs/cs/group/infolab/software
scp akrevl@madmax:/afs/cs/group/infolab/software/p7*.rpm ./ rpm -Uvh p7zip-9.20.1-3.el6.x86_64.rpm
Ganglia
yum install ganglia-gmond
Iperf
http://sourceforge.net/projects/iperf/
yum install iperf
Fio
http://freecode.com/projects/fio
yum install fio
Tcl/Tk
yum install tk tk-devel tcl-devel tix-devel
Python 2.7
curl -O http://www.elders.princeton.edu/data/PU_IAS/6.3/x86_64/os/Computational/python27-2.7.3-6.2.puias6.x86_64.rpm curl -O http://www.elders.princeton.edu/data/PU_IAS/6.3/x86_64/os/Computational/python27-setuptools-0.6.27-2.puias6.noarch.rpm curl -O http://www.elders.princeton.edu/data/PU_IAS/6.3/x86_64/os/Computational/python27-tools-2.7.3-6.2.puias6.x86_64.rpm curl -O http://www.elders.princeton.edu/data/PU_IAS/6.3/x86_64/os/Computational/python27-libs-2.7.3-6.2.puias6.x86_64.rpm curl -O http://www.elders.princeton.edu/data/PU_IAS/6.3/x86_64/os/Computational/tkinter27-2.7.3-6.2.puias6.x86_64.rpm curl -O http://www.elders.princeton.edu/data/PU_IAS/6.3/x86_64/os/Computational/python27-devel-2.7.3-6.2.puias6.x86_64.rpm rpm -Uvh python27-*.rpm tkinter27-2.7.3-6.2.puias6.x86_64.rpm
PIL
easy_install-2.7 PIL
==== PyYAML ===
easy_install-2.7 pyyaml
Nose
easy_install-2.7 nose
BeautifulSoup
http://www.crummy.com/software/BeautifulSoup/
easy_install-2.7 beautifulsoup4 python2.7 from bs4 import BeautifulSoup
Numpy
easy_install-2.7 numpy
Scipy
easy_install-2.7 scipy
Matplotlib
easy_install-2.7 matplotlib
NetworkX
easy_install-2.7 networkx
PyGraphViz
http://networkx.lanl.gov/pygraphviz/
easy_install-2.7 pygraphviz
Nltk
easy_install-2.7 nltk
Scikit-learn
http://scikit-learn.org/stable/
easy_install-2.7 scikit-learn
Cvxopt
http://abel.ee.ucla.edu/cvxopt/
This package has the setup.py in the wrong directory which confuses easy_install-2.7.
curl -O "http://abel.ee.ucla.edu/src/cvxopt-1.1.5.tar.gz" tar xvfz cvxopt-1.1.5.tar.gz cd cvxopt-1.1.5/src/ python2.7 setup.py install
Python 3.3
curl -O http://springdale.math.ias.edu/data/puias/computational/6/x86_64/python3-3.3.0-1.puias6.x86_64.rpm curl -O http://springdale.math.ias.edu/data/puias/computational/6/x86_64/python3-debug-3.3.0-1.puias6.x86_64.rpm curl -O http://springdale.math.ias.edu/data/puias/computational/6/x86_64/python3-debuginfo-3.3.0-1.puias6.x86_64.rpm curl -O http://springdale.math.ias.edu/data/puias/computational/6/x86_64/python3-devel-3.3.0-1.puias6.x86_64.rpm curl -O http://springdale.math.ias.edu/data/puias/computational/6/x86_64/python3-libs-3.3.0-1.puias6.x86_64.rpm curl -O http://springdale.math.ias.edu/data/puias/computational/6/x86_64/python3-test-3.3.0-1.puias6.x86_64.rpm curl -O http://springdale.math.ias.edu/data/puias/computational/6/x86_64/python3-tkinter-3.3.0-1.puias6.x86_64.rpm curl -O http://springdale.math.ias.edu/data/puias/computational/6/x86_64/python3-tools-3.3.0-1.puias6.x86_64.rpm rpm -Uvh python3-*.rpm
Java
Oracle Java
http://www.oracle.com/technetwork/java/index.html
# scp the file from somewhere because of the annoying license agreement rpm -Uvh jdk-7u15-linux-x64.rpm /usr/java/default/bin/java -version
Apache Ant
yum install ant
Apache Maven
curl -O "http://www.trieuvan.com/apache/maven/maven-3/3.0.4/binaries/apache-maven-3.0.4-bin.tar.gz" tar xvfz apache-maven-3.0.4-bin.tar.gz mv apache-maven-3.0.4 /usr/local/apache-maven scp akrevl@iln29:/etc/profile.d/maven.sh /etc/profile.d/
R-project
yum install R
Matlab
http://www.mathworks.com/products/matlab/
License server(s):
- rocky.stanford.edu
- eel.stanford.edu
User assignments
- sudo users:
- akrevl, rok, jure
Kernel parameters for big memory machines
#/etc/sysctl.conf vm.overcommit_ratio = 100 vm.overcommit_memory = 2