SNAP Library 2.2, User Reference  2014-03-11 19:15:55
SNAP, a general purpose, high performance system for analysis and manipulation of large networks
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subgraph.h
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00001 
00005 
00006 namespace TSnap {
00007 
00009 // Convert between graph types and get subgraphs
00010 
00011 // node subgraphs
00013 
00018 template<class PGraph> PGraph GetSubGraph(const PGraph& Graph, const TIntV& NIdV);
00020 
00028 PUNGraph GetSubGraph(const PUNGraph& Graph, const TIntV& NIdV, const bool& RenumberNodes=false);
00029 // Returns an induced subgraph of a directed graph Graph with NIdV nodes with an optional node renumbering. ##TSnap::GetSubGraph-2
00030 PNGraph GetSubGraph(const PNGraph& Graph, const TIntV& NIdV, const bool& RenumberNodes=false);
00031 // TODO ROK 2012/08/15 PNGraph GetSubGraph is not documented by doxygen.
00032 //  It is combined with PUNGraph GetSubGraph.
00033 
00034 // edge subgraphs
00036 
00045 template<class PGraph> PGraph GetESubGraph(const PGraph& Graph, const TIntV& EIdV);
00046 // Returns a subgraph of graph Graph with EdgeV edges. ##TSnap::GetESubGraph-1
00047 template<class PGraph> PGraph GetESubGraph(const PGraph& Graph, const TIntPrV& EdgeV);
00048 // TODO ROK 2012/08/15 PGraph GetESubGraph TIntPrV is not documented by doxygen.
00049 //  It is combined with PGraph GetESubGraph TIntV.
00051 
00064 template<class PGraph, class TEdgeDat> PGraph GetEDatSubGraph(const PGraph& Graph, const TEdgeDat& EDat, const int& Cmp);
00066 
00080 template<class PGraph, class TEdgeDat> PGraph GetEDatSubGraph(const PGraph& Graph, const TIntV& NIdV, const TEdgeDat& EDat, const int& Cmp);
00081 
00082 // convert between the graphs. Does NOT copy the data
00084 
00095 template<class POutGraph, class PInGraph> POutGraph ConvertGraph(const PInGraph& InGraph, const bool& RenumberNodes=false);
00097 
00108 template<class POutGraph, class PInGraph> POutGraph ConvertSubGraph(const PInGraph& InGraph, const TIntV& NIdV, const bool& RenumberNodes=false);
00109 // TODO RS 2012/08/14 find out why TSnap::ConvertSubGraph<PUNGraph>(NGraph, NIdV, true) aborts
00111 
00122 template<class POutGraph, class PInGraph> POutGraph ConvertESubGraph(const PInGraph& InGraph, const TIntV& EIdV, const bool& RenumberNodes=false);
00123 // does not work on multigraphs
00124 
00125 // get random (induced) subgraphs 
00127 
00130 template<class PGraph> PGraph GetRndSubGraph(const PGraph& Graph, const int& NNodes);
00132 
00135 template<class PGraph> PGraph GetRndESubGraph(const PGraph& Graph, const int& NEdges);
00136 
00138 // Implementation
00139 namespace TSnapDetail {
00140 // Slow for small sub-graphs as it traverses all the edges of Graph
00141 template <class PGraph, bool IsMultiGraph>
00142 struct TGetSubGraph {
00143   static PGraph Do(const PGraph& Graph, const TIntV& NIdV) {
00144     PGraph NewGraphPt = PGraph::TObj::New();
00145     typename PGraph::TObj& NewGraph = *NewGraphPt;
00146     NewGraph.Reserve(NIdV.Len(), -1);
00147     for (int n = 0; n < NIdV.Len(); n++) {
00148       if (Graph->IsNode(NIdV[n])) {
00149         NewGraph.AddNode(Graph->GetNI(NIdV[n])); }
00150     }
00151     for (typename PGraph::TObj::TEdgeI EI = Graph->BegEI(); EI < Graph->EndEI(); EI++) {
00152       if (NewGraph.IsNode(EI.GetSrcNId()) && NewGraph.IsNode(EI.GetDstNId())) {
00153         NewGraph.AddEdge(EI); }
00154     }
00155     NewGraph.Defrag();
00156     return NewGraphPt;
00157   }
00158 };
00159 
00160 template <class PGraph> 
00161 struct TGetSubGraph<PGraph, false> { // not multigraph
00162   static PGraph Do(const PGraph& Graph, const TIntV& NIdV) {
00163     CAssert(! HasGraphFlag(typename PGraph::TObj, gfMultiGraph));
00164     PGraph NewGraphPt = PGraph::TObj::New();
00165     typename PGraph::TObj& NewGraph = *NewGraphPt;
00166     NewGraph.Reserve(NIdV.Len(), -1);
00167     TIntSet NodeSet;
00168     for (int n = 0; n < NIdV.Len(); n++) {
00169       if (! HasGraphFlag(typename PGraph::TObj, gfNodeDat)) {
00170         if (Graph->IsNode(NIdV[n])) { NewGraph.AddNode(NIdV[n]); NodeSet.AddKey(NIdV[n]); } }
00171       else {
00172         if (Graph->IsNode(NIdV[n])) { NewGraph.AddNode(Graph->GetNI(NIdV[n])); NodeSet.AddKey(NIdV[n]); } }
00173     }
00174     for (int n = 0; n < NodeSet.Len(); n++) {
00175       const int SrcNId = NodeSet[n];
00176       const typename PGraph::TObj::TNodeI NI = Graph->GetNI(SrcNId);
00177       for (int edge = 0; edge < NI.GetOutDeg(); edge++) {
00178         const int OutNId = NI.GetOutNId(edge);
00179         if (NewGraph.IsNode(OutNId)) {
00180           if (! HasGraphFlag(typename PGraph::TObj, gfEdgeDat)) { 
00181             NewGraph.AddEdge(SrcNId, OutNId); }
00182           else { 
00183             NewGraph.AddEdge(Graph->GetEI(SrcNId, OutNId)); } // also copy data
00184         }
00185       }
00186     }
00187     NewGraph.Defrag();
00188     return NewGraphPt;
00189   }
00190 };
00191 }; // TSnapDetail
00192 
00193 template<class PGraph> 
00194 PGraph GetSubGraph(const PGraph& Graph, const TIntV& NIdV) {
00195   return TSnapDetail::TGetSubGraph<PGraph, HasGraphFlag(typename PGraph::TObj, gfMultiGraph)>
00196     ::Do(Graph, NIdV);
00197 }
00198 
00199 template<class PGraph> 
00200 PGraph GetESubGraph(const PGraph& Graph, const TIntV& EIdV) {
00201   CAssert(HasGraphFlag(typename PGraph::TObj, gfMultiGraph));
00202   PGraph NewGraphPt = PGraph::TObj::New();
00203   typename PGraph::TObj& NewGraph = *NewGraphPt;
00204   NewGraph.Reserve(-1, EIdV.Len());
00205   for (int edge = 0; edge < EIdV.Len(); edge++) {
00206     const int EId = EIdV[edge];
00207     IAssert(Graph->IsEdge(EId));
00208     const typename PGraph::TObj::TEdgeI EI = Graph->GetEI(EId);
00209     if (! NewGraph.IsNode(EI.GetSrcNId())) {
00210       NewGraph.AddNode(Graph->GetNI(EI.GetSrcNId())); 
00211     }
00212     if (! NewGraph.IsNode(EI.GetDstNId())) {
00213       NewGraph.AddNode(Graph->GetNI(EI.GetDstNId())); 
00214     }
00215     NewGraph.AddEdge(EI);
00216   }
00217   return NewGraphPt;
00218 }
00219 
00220 template<class PGraph> 
00221 PGraph GetESubGraph(const PGraph& Graph, const TIntPrV& EdgeV) {
00222   PGraph NewGraphPt = PGraph::TObj::New();
00223   typename PGraph::TObj& NewGraph = *NewGraphPt;
00224   NewGraph.Reserve(-1, EdgeV.Len());
00225   for (int edge = 0; edge < EdgeV.Len(); edge++) {
00226     const int SrcNId = EdgeV[edge].Val1;
00227     const int DstNId = EdgeV[edge].Val2;
00228     const typename PGraph::TObj::TEdgeI EI = Graph->GetEI(SrcNId, DstNId);
00229     if (! NewGraph.IsNode(EI.GetSrcNId())) {
00230       NewGraph.AddNode(Graph->GetNI(EI.GetSrcNId())); 
00231     }
00232     if (! NewGraph.IsNode(EI.GetDstNId())) {
00233       NewGraph.AddNode(Graph->GetNI(EI.GetDstNId())); 
00234     }
00235     NewGraph.AddEdge(EI);
00236   }
00237   return NewGraphPt;
00238 }
00239 
00240 // Get a subgraph on NIdV nodes, where edge data is Cmp (-1:less, 0:equal, 1:greater) than EDat
00241 template<class PGraph, class TEdgeDat> 
00242 PGraph GetEDatSubGraph(const PGraph& Graph, const TEdgeDat& EDat, const int& Cmp) {
00243   CAssert(HasGraphFlag(typename PGraph::TObj, gfEdgeDat));
00244   PGraph NewGraphPt = PGraph::TObj::New();
00245   typename PGraph::TObj& NewGraph = *NewGraphPt;
00246   for (typename PGraph::TObj::TEdgeI EI = Graph->BegEI(); EI < Graph->EndEI(); EI++) {
00247     if ((Cmp==1 && EI()>EDat) || (Cmp==-1 && EI()<EDat) || (Cmp==0 && EI()==EDat)) {
00248       if (! NewGraph.IsNode(EI.GetSrcNId())) {
00249         NewGraph.AddNode(Graph->GetNI(EI.GetSrcNId()));
00250       }
00251       if (! NewGraph.IsNode(EI.GetDstNId())) {
00252         NewGraph.AddNode(Graph->GetNI(EI.GetDstNId()));
00253       }
00254       NewGraph.AddEdge(EI); 
00255     }
00256   }
00257   return NewGraphPt;
00258 }
00259 
00260 // Get a subgraph on NIdV nodes, where edge data is Cmp (-1:less, 0:equal, 1:greater) than EDat
00261 template<class PGraph, class TEdgeDat> 
00262 PGraph GetEDatSubGraph(const PGraph& Graph, const TIntV& NIdV, const TEdgeDat& EDat, const int& Cmp) {
00263   CAssert(HasGraphFlag(typename PGraph::TObj, gfEdgeDat));
00264   PGraph NewGraphPt = PGraph::TObj::New();
00265   typename PGraph::TObj& NewGraph = *NewGraphPt;
00266   NewGraph.Reserve(NIdV.Len(), -1);
00267   for (int n = 0; n < NIdV.Len(); n++) {
00268     NewGraph.AddNode(Graph->GetNI(NIdV[n])); 
00269   }
00270   for (typename PGraph::TObj::TEdgeI EI = Graph->BegEI(); EI < Graph->EndEI(); EI++) {
00271     if (NewGraph.IsNode(EI.GetSrcNId()) && NewGraph.IsNode(EI.GetDstNId()) &&
00272      ((Cmp==1 && EI()>EDat)|| (Cmp==-1 && EI()<EDat) || (Cmp==0 && EI()==EDat))) {
00273       NewGraph.AddEdge(EI); }
00274   }
00275   NewGraph.Defrag();
00276   return NewGraphPt;
00277 }
00278 
00279 // Converts between different types of graphs/networks
00280 // Node/edge data is not copied between the graphs.
00281 template<class POutGraph, class PInGraph> 
00282 POutGraph ConvertGraph(const PInGraph& InGraph, const bool& RenumberNodes) {
00283   POutGraph OutGraphPt = POutGraph::TObj::New();
00284   typename POutGraph::TObj& OutGraph = *OutGraphPt;
00285   OutGraph.Reserve(InGraph->GetNodes(), InGraph->GetEdges());
00286   if (! RenumberNodes) {
00287     for (typename PInGraph::TObj::TNodeI NI = InGraph->BegNI(); NI < InGraph->EndNI(); NI++) {
00288       OutGraph.AddNode(NI.GetId());
00289     }
00290     for (typename PInGraph::TObj::TEdgeI EI = InGraph->BegEI(); EI < InGraph->EndEI(); EI++) {
00291       OutGraph.AddEdge(EI.GetSrcNId(), EI.GetDstNId());
00292       if (! HasGraphFlag(typename PInGraph::TObj, gfDirected) && HasGraphFlag(typename POutGraph::TObj, gfDirected)) { // add edge in the other direction
00293         OutGraph.AddEdge(EI.GetDstNId(), EI.GetSrcNId()); }
00294     }
00295   } else { // renumber nodes so that node ids are 0...N-1
00296     TIntSet NIdSet(InGraph->GetNodes());
00297     for (typename PInGraph::TObj::TNodeI NI = InGraph->BegNI(); NI < InGraph->EndNI(); NI++) {
00298       const int nid = NIdSet.AddKey(NI.GetId());
00299       OutGraph.AddNode(nid);
00300     }
00301     for (typename PInGraph::TObj::TEdgeI EI = InGraph->BegEI(); EI < InGraph->EndEI(); EI++) {
00302       const int SrcNId = NIdSet.GetKeyId(EI.GetSrcNId());
00303       const int DstNId = NIdSet.GetKeyId(EI.GetDstNId());
00304       OutGraph.AddEdge(SrcNId, DstNId);
00305       if (! HasGraphFlag(typename PInGraph::TObj, gfDirected) && HasGraphFlag(typename POutGraph::TObj, gfDirected)) {
00306         OutGraph.AddEdge(DstNId, SrcNId); }
00307     }
00308   }
00309   //OutGraph.Defrag();
00310   return OutGraphPt;
00311 }
00312 
00313 namespace TSnapDetail {
00314 // Slow for small sub-graphs as it traverses all the edges of Graph
00315 template <class POutGraph, class PInGraph, bool IsMultiGraph>
00316 struct TConvertSubGraph {
00317   static POutGraph Do(const PInGraph& InGraph, const TIntV& NIdV, const bool& RenumberNodes) {
00318     POutGraph OutGraphPt = POutGraph::TObj::New();
00319     typename POutGraph::TObj& OutGraph = *OutGraphPt;
00320     if (! RenumberNodes) {
00321       for (int n = 0; n < NIdV.Len(); n++) {
00322         OutGraph.AddNode(NIdV[n]);
00323       }
00324       for (typename PInGraph::TObj::TEdgeI EI = InGraph->BegEI(); EI < InGraph->EndEI(); EI++) {
00325         if (! OutGraph.IsNode(EI.GetSrcNId()) || ! OutGraph.IsNode(EI.GetDstNId())) { continue; }
00326         OutGraph.AddEdge(EI.GetSrcNId(), EI.GetDstNId());
00327         if (! HasGraphFlag(typename PInGraph::TObj, gfDirected) && HasGraphFlag(typename POutGraph::TObj, gfDirected)) {
00328           OutGraph.AddEdge(EI.GetDstNId(), EI.GetSrcNId());
00329         }
00330       }
00331     } else { // renumber nodes so that node ids are 0...N-1
00332       TIntSet NIdSet(InGraph->GetNodes());
00333       for (int n = 0; n < NIdV.Len(); n++) {
00334         const int NId = NIdSet.AddKey(NIdV[n]);
00335         OutGraph.AddNode(NId);
00336       }
00337       for (typename PInGraph::TObj::TEdgeI EI = InGraph->BegEI(); EI < InGraph->EndEI(); EI++) {
00338         const int SrcNId = NIdSet.GetKeyId(EI.GetSrcNId());
00339         const int DstNId = NIdSet.GetKeyId(EI.GetDstNId());
00340         if (! OutGraph.IsNode(SrcNId) || ! OutGraph.IsNode(DstNId)) { continue; }
00341         OutGraph.AddEdge(SrcNId, DstNId);
00342         if (! HasGraphFlag(typename PInGraph::TObj, gfDirected) && HasGraphFlag(typename POutGraph::TObj, gfDirected)) {
00343           OutGraph.AddEdge(DstNId, SrcNId);
00344         }
00345       }
00346     }
00347     OutGraph.Defrag();
00348     return OutGraphPt;
00349   }
00350 };
00351 
00352 template <class POutGraph, class PInGraph>
00353 struct TConvertSubGraph<POutGraph, PInGraph, false> { // InGraph is not multigraph
00354   static POutGraph Do(const PInGraph& InGraph, const TIntV& NIdV, const bool& RenumberNodes) {
00355     POutGraph OutGraphPt = POutGraph::TObj::New();
00356     typename POutGraph::TObj& OutGraph = *OutGraphPt;
00357     if (! RenumberNodes) {
00358       for (int n = 0; n < NIdV.Len(); n++) {
00359         OutGraph.AddNode(NIdV[n]); }
00360       for (int n = 0; n < NIdV.Len(); n++) {
00361         typename PInGraph::TObj::TNodeI NI = InGraph->GetNI(NIdV[n]);
00362         for (int e = 0; e < NI.GetOutDeg(); e++) {
00363           const int dst = NI.GetOutNId(e);
00364           if (! OutGraph.IsNode(dst)) { continue; }
00365           OutGraph.AddEdge(NIdV[n], dst);
00366         }
00367       }
00368     } else { // renumber nodes so that node ids are 0...N-1
00369       TIntSet NIdSet(InGraph->GetNodes());
00370       for (int n = 0; n < NIdV.Len(); n++) {
00371         const int NId = NIdSet.AddKey(NIdV[n]);
00372         OutGraph.AddNode(NId);
00373       }
00374       for (int n = 0; n < NIdV.Len(); n++) {
00375         typename PInGraph::TObj::TNodeI NI = InGraph->GetNI(NIdV[n]);
00376         const int src = NIdSet.GetKey(NIdV[n]);
00377         for (int e = 0; e < NI.GetOutDeg(); e++) {
00378           const int dst = NIdSet.GetKey(NI.GetOutNId(e));
00379           if (! OutGraph.IsNode(dst)) { continue; }
00380           OutGraph.AddEdge(src, dst);
00381         }
00382       }
00383     }
00384     OutGraph.Defrag();
00385     return OutGraphPt;
00386   }
00387 };
00388 } // TSnapDetail
00389 
00390 // May be slow as it traverses all the edges of the in-graph to create the sub-graph
00391 template<class POutGraph, class PInGraph> 
00392 POutGraph ConvertSubGraph(const PInGraph& InGraph, const TIntV& NIdV, const bool& RenumberNodes) {
00393   return TSnapDetail::TConvertSubGraph<POutGraph, PInGraph, HasGraphFlag(typename PInGraph::TObj, gfMultiGraph)>::Do(InGraph, NIdV, RenumberNodes);
00394 }
00395 
00396 template<class POutGraph, class PInGraph> 
00397 POutGraph ConvertESubGraph(const PInGraph& InGraph, const TIntV& EIdV, const bool& RenumberNodes) {
00398   CAssert(HasGraphFlag(typename PInGraph::TObj, gfMultiGraph)); // needs to have explicit edges
00399   POutGraph NewGraphPt = POutGraph::TObj::New();
00400   typename POutGraph::TObj& NewGraph = *NewGraphPt;
00401   NewGraph.Reserve(-1, EIdV.Len());
00402   if (! RenumberNodes) {
00403     for (int edge = 0; edge < EIdV.Len(); edge++) {
00404       const int EId = EIdV[edge];
00405       IAssert(InGraph->IsEdge(EId));
00406       const typename PInGraph::TObj::TEdgeI EI = InGraph->GetEI(EId);
00407       const int SrcNId = EI.GetSrcNId();
00408       const int DstNId = EI.GetDstNId();
00409       if (! NewGraph.IsNode(SrcNId)) {
00410         NewGraph.AddNode(SrcNId); }
00411       if (! NewGraph.IsNode(DstNId)) {
00412         NewGraph.AddNode(DstNId); }
00413       NewGraph.AddEdge(SrcNId, DstNId);
00414     }
00415   } else {
00416     // renumber nodes so that node ids are 0...N-1
00417     TIntSet NIdSet(InGraph->GetNodes());
00418     for (int edge = 0; edge < EIdV.Len(); edge++) {
00419       const int EId = EIdV[edge];
00420       IAssert(InGraph->IsEdge(EId));
00421       const typename PInGraph::TObj::TEdgeI EI = InGraph->GetEI(EId);
00422       const int SrcNId = NIdSet.AddKey(EI.GetSrcNId()); // map node ids
00423       const int DstNId = NIdSet.AddKey(EI.GetDstNId());
00424       if (! NewGraph.IsNode(SrcNId)) {
00425         NewGraph.AddNode(SrcNId); }
00426       if (! NewGraph.IsNode(DstNId)) {
00427         NewGraph.AddNode(DstNId); }
00428       NewGraph.AddEdge(SrcNId, DstNId);
00429     }
00430   }
00431   return NewGraphPt;
00432 }
00433 
00434 template<class PGraph> 
00435 PGraph GetRndSubGraph(const PGraph& Graph, const int& NNodes) {
00436   IAssert(NNodes <= Graph->GetNodes());
00437   TIntV NIdV;
00438   Graph->GetNIdV(NIdV);
00439   NIdV.Shuffle(TInt::Rnd);
00440   NIdV.Del(NNodes, NIdV.Len()-1);
00441   IAssert(NIdV.Len() == NNodes);
00442   return GetSubGraph(Graph, NIdV);
00443 }
00444 
00445 template<class PGraph> 
00446 PGraph GetRndESubGraph(const PGraph& Graph, const int& NEdges) {
00447   CAssert(! HasGraphFlag(typename PGraph::TObj, gfMultiGraph));
00448   TIntPrV EdgeV(Graph->GetEdges(), 0);
00449   for (typename PGraph::TObj::TEdgeI EI = Graph->BegEI(); EI < Graph->EndEI(); EI++) {
00450     EdgeV.Add(TIntPr(EI.GetSrcNId(), EI.GetDstNId()));
00451   }
00452   EdgeV.Shuffle(TInt::Rnd);
00453   EdgeV.Del(NEdges, EdgeV.Len()-1);
00454   IAssert(EdgeV.Len() == NEdges);
00455   return GetESubGraph(Graph, EdgeV);
00456 }
00457 
00458 } // namespace TSnap